Skip to main content

Table 4 Entity-level performance of PubMedBERT on the gold test set. Original scores refer to the performance of the model before self-training; self-training scores refer to the performance of the model at the best iteration (6th iteration) of self-training. ‘R’ and ‘P’ refer to recall and precision, respectively

From: PICO entity extraction for preclinical animal literature

 

Original scores

Self-training scores

F1

R

P

F1

R

P

Comparator

16.0

10.0

40.0

48.5

40.0

61.5

Induction

49.1

50.6

47.7

48.0

49.4

46.6

Intervention

70.2

76.1

65.2

69.8

74.6

65.6

Outcome

65.4

70.6

60.9

66.9

70.6

63.6

Species

98.1

100.0

96.4

98.1

100.0

96.4

Strain

63.4

72.2

56.5

70.0

77.8

63.6

Overall

69.9

73.4

66.7

71.0

74.0

68.2